On Nested Diversities and Novel Correlation-Based Entropies

نویسنده

  • Keisuke Okamura
چکیده

The notion of diversity spans across disciplines, arising in a wide range of natural and social sciences. As is well-acknowledged, essential defining characteristics of diversity include the number of categories involved, evenness of the element distribution among categories, and dissimilarity between categories. In addition, there are two intrinsic factors that also influence the quantification of diversity. These are how much weight to place on the category prevalence, and how much weight to place on the between-category dissimilarities. In Part I of this paper, we provide a unified framework for measuring, comparing and partitioning diversity that incorporates all of these aspects. A new principle called the Nesting Principle is established, stating that diversity remains invariant under arbitrary nesting or partitioning of the constituent categories or individual elements. An important consequence of this principle is that the weight on the category prevalence must be set such that the diversity function depends quadratically on the relative abundances of categories, while the other weight on the between-category dissimilarity can be adjusted independently and continuously. The resulting diversity index has a unique interpretation in terms of a certain correlation sum defined within the assemblage whose diversity is to be measured. The formula for the effective dissimilarity between two arbitrary assemblages is also provided, which takes the form of a cross-correlation sum, and is compatible with the Nesting Principle. In ecology, this provides a possible solution to the long-standing problem of how to partition diversity into within and between components in a consistent manner. Classic entropy measures of Rényi and Tsallis, including Boltzmann-Gibbs and Shannon entropy, are also generalised to incorporate the dependence on correlations among the constituents. In Part II, we discuss applications of the correlation-based, nesting-invariant entropies to specific research contexts. Specifically, the extended Rényi entropy is used to analyse dynamical and fractal properties of a chaotic attractor system. Further, implications of the extended Tsallis entropy on non-extensive statistical physics are explored. ∗ k.okamura_at_alumni.lse.ac.uk ar X iv :1 80 4. 02 45 4v 1 [ qbi o. Q M ] 2 9 M ar 2 01 8

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Entropy and diversity

Entropies such as the Shannon /Wiener and Gini /Simpson indices are not themselves diversities. Conversion of these to effective number of species is the key to a unified and intuitive interpretation of diversity. Effective numbers of species derived from standard diversity indices share a common set of intuitive mathematical properties and behave as one would expect of a diversity, while raw i...

متن کامل

Computing Entropies with Nested Sampling

The Shannon entropy, and related quantities such as mutual information, can be used to quantify uncertainty and relevance. However, in practice, it can be difficult to compute these quantities for arbitrary probability distributions, particularly if the probability mass functions or densities cannot be evaluated. This paper introduces a computational approach, based on Nested Sampling, to evalu...

متن کامل

Characterizations Using Entropies of Records in a Geometric Random Record Model

Suppose that a geometrically distributed number of observations are available from an absolutely continuous distribution function $F$, within this set of observations denote the random number of records by $M$. This is called geometric random record model. In this paper, characterizations of $F$ are provided in terms of the subsequences entropies of records conditional on events ${M geq n}$ or ...

متن کامل

Molecular survey of avian circoviruses in some non-psittacine birds and detection of a novel canary circovirus in a pigeon

Background: Circoviruses are small, non-enveloped, single stranded DNA viruses. There is scarce information about these agents in non-psittacine birds. Aims: It is attempted to detect and characterize circoviruses in non-psittacine birds. Methods: Forty-five samples were collected from different non-psittacine species belonging to seven avian o...

متن کامل

P-215: Discovery of A Novel APA Variant of A Human Potential Gene Based on Expressed Sequenced Tags Analysis

Background: Expressed sequence tags (ESTs) are sequences of cDNA fragments prepared from different tissue sources. There are over one million of these sequences in the publicly available database, and these sequences are believed to represent more than half of all human genes. The ESTs belong to different cDNA libraries, was prepared from one particular cell type, organ, or tumor. Therefore, th...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2018